The V471A Polymorphism in Autophagy-Related Gene ATG7 Modifies Age at Onset Specifically in Italian Huntington Disease Patients

The cause of Huntington disease (HD) is a polyglutamine repeat expansion of more than 36 units in the huntingtin protein, which is inversely correlated with the age at onset of the disease. However, additional genetic factors are believed to modify the course and the age at onset of HD. Recently, we identified the V471A polymorphism in the autophagy-related gene ATG7, a key component of the autophagy pathway that plays an important role in HD pathogenesis, to be associated with the age at onset in a large group of European Huntington disease patients. To confirm this association in a second independent patient cohort, we analysed the ATG7 V471A polymorphism in additional 1,464 European HD patients of the “REGISTRY” cohort from the European Huntington Disease Network (EHDN). In the entire REGISTRY cohort we could not confirm a modifying effect of the ATG7 V471A polymorphism. However, analysing a modifying effect of ATG7 in these REGISTRY patients and in patients of our previous HD cohort according to their ethnic origin, we identified a significant effect of the ATG7 V471A polymorphism on the HD age at onset only in the Italian population (327 patients). In these Italian patients, the polymorphism is associated with a 6-years earlier disease onset and thus seems to have an aggravating effect. We could specify the role of ATG7 as a genetic modifier for HD particularly in the Italian population. This result affirms the modifying influence of the autophagic pathway on the course of HD, but also suggests population-specific modifying mechanisms in HD pathogenesis.     

Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo‐reduplication for fruit growth in tomato

Tomato fruit growth is characterized by the occurrence of numerous rounds of DNA endo‐reduplication in connection with cell expansion and final fruit size determination. Endo‐reduplication is an impairment of mitosis that originates from the selective degradation of M phase‐specific cyclins via the ubiquitin‐mediated proteolytic pathway, requiring the E3 ubiquitin ligase anaphase promoting complex/cyclosome (APC/C). Two types of APC/C activators, namely CCS52 and CDC20 proteins, exist in plants. We report here the molecular characterization of such APC/C activators during fruit development, and provide an in planta functional analysis of SlCCS52A, a gene that is specifically associated with endo‐reduplication in tomato. Altering SlCCS52A expression in either a negative or positive manner had an impact on the extent of endo‐reduplication in fruit, and fruit size was reduced in both cases. In SlCCS52A over‐expressing fruits, endo‐reduplication was initially delayed, accounting for the altered final fruit size, but resumed and was even enhanced at 15 days post anthesis (dpa), leading to fruit growth recovery. This induction of growth mediated by endo‐reduplication had a considerable impact on nitrogen metabolism in developing fruits. Our data contribute to unravelling of the physiological role of endo‐reduplication in growth induction during tomato fruit development.     

Age at onset in Huntington’s disease is modified by the autophagy pathway: implication of the V471A polymorphism in Atg7

Huntington’s disease (HD) is caused by an expansion of a polyglutamine repeat of more than 35 units in the huntingtin protein. The expanded repeat length is inversely correlated with the age at onset (AAO); however, additional genetic factors apart from the expanded CAG repeat length can modify the course and the AAO in HD. Aberrations in macroautophagy have been observed in Huntington, Alzheimer, Parkinson, motor neuron and prion diseases. Therefore, we hypothesized that polymorphisms in autophagy-related (Atg) genes might contribute to the variation in the AAO. We initially tested eight single nucleotide polymorphisms in five Atg genes (Atg3, Atg5, Atg7, Atg16L1 and Beclin-1) for their frequency of ≥1%. Subsequently, we investigated the polymorphisms Atg7 V471A and Atg16L1 T281A for a disease-modifying effect in more than 900 European HD patients (including 2 populations consisting of 346 German patients and 327 patients of Italian descent). One polymorphism in the Atg7 gene that substitutes alanine for valine (V471A) showed a significant effect on the AAO (P = 0.0050) and was associated with an earlier disease onset of 4 years. Our results further support the important pathophysiological role of autophagy in HD.     

Long-term weekly iron-folic acid and de-worming is associated with stabilised haemoglobin and increasing iron stores in non-pregnant women in Vietnam

Background

The prevalence of anaemia and iron deficiency in women remains high worldwide. WHO recommends weekly iron-folic acid supplementation where anaemia rates in non-pregnant women of reproductive age are higher than 20%. In 2006, a demonstration project consisting of weekly iron-folic acid supplementation and regular de-worming was set up in two districts in a northern province in Vietnam where anaemia and hookworm rates were 38% and 76% respectively. In 2008 the project was expanded to all districts in the province, targeting some 250,000 women. The objectives of this study were to: 1) examine changes in haemoglobin, iron stores and soil transmitted helminth infection prevalence over three years and 2) assess women''s access to and compliance with the intervention.

Methods and Findings

The study was a semi-cross-sectional, semi-longitudinal panel design with a baseline survey, three impact surveys at three-, twelve- and thirty months after commencement of the intervention, and three compliance surveys after ten weeks, eighteen and thirty six months.

Results

After thirty months, mean haemoglobin stabilised at 130.3 g/L, an increase of 8.2 g/L from baseline, and mean serum ferritin rose from 23.9 µg/L to 52 µg/L. Hookworm prevalence fell from 76% to 22% over the same period. After thirty six months, 81% of the target population were receiving supplements and 87% were taking 75% or more of the supplements they received.

Conclusions

Weekly iron-folic acid supplementation and regular de-worming was effective in significantly and sustainably reducing the prevalence of anaemia and soil transmitted helminth infections and high compliance rates were maintained over three years.     

Doxorubicin and 5-fluorouracil resistant hepatic cancer cells demonstrate stem-like properties

The efficacy of hepatocellular carcinoma (HCC) treatment is very low because of the high percentage of recurrence and resistance to anticancer agents. Hepatic cancer stem cells (HCSCs) are considered the origin of such recurrence and resistance. Our aim was to evaluate the stemness of doxorubicin and 5-fluorouracil resistant hepatic cancer cells and establish the new method to isolate the HCSCs from primary cultured HCC tumors. HCC biopsies were used to establish primary cultures. Then, primary cells were selected for HCSCs by culture in medium supplemented with doxorubicin (0, 0.1, 0.25, 0.5 or 1 μg/mL), 5-fluorouracil (0, 0.1, 0.25, 0.5 or 1 μg/mL) or their combination. Selection was confirmed by detection of HCSC markers such as CD133, CD13, CD90, and the side population was identified by rhodamine 123 efflux. The cell population with the strongest expression of these markers was used to evaluate the cell cycle, gene expression profile, tumor sphere formation, marker protein expression, and in vivo tumorigenesis. Selective culture of primary cells in medium supplemented with 0.5 μg/mL doxorubicin and 1 μg/mL 5-fluorouracil selected cancer cells with the highest stemness properties. Selected cells strongly expressed CD13, CD133, CD90, and CD326, efflux rhodamine 123 and formed tumor spheres in suspension. Moreover, selected cells were induced to differentiate into cells with high expression of CD19 and AFP (alpha-fetoprotein), and importantly, could form tumors in NOD/SCID mice upon injection of 1 × 10⁵ cells/mouse. Selective culture with doxorubicin and 5-fluorouracil will enrich HCSCs, is an easy method to obtain HCSCs that can be used to develop better therapeutic strategies for patients with HCC, and particularly HCSC-targeting therapy.     

Cytokine Profile in Human Eyes: Contribution of a New Cytokine Combination for Differential Diagnosis between Intraocular Lymphoma or Uveitis

Primary intraocular lymphoma (PIOL), also called primary vitreoretinal lymphomas, often masquerades as uveitis. This misdiagnosis can result in subsequent brain involvement and oculocerebral lymphoma (OCL). In this study, we sought to characterize the helper T-cell type 1 (Th1)/Th2 cytokine profile in vitreous samples from patients with PIOL, OCL, uveitis and controls with non-inflammatory disease. Vitreous and aqueous humor samples from 87 patients with PIOL (n = 30), OCL (n = 12), uveitis (n = 34), and retinal detachment (RD) without hemorrhage (n = 11) were analyzed and their concentrations of interleukin (IL)-2, IL-4, IL-6, IL-10, interferon (IFN)-γ, and tumor necrosis factor (TNF)-α were determined by flow cytometric bead arrays (CBA). The IL-10 levels determined by CBA were compared with those by ELISA. IL-10 concentrations measured by CBA and ELISA were highly correlated. IL-2, IL-4, and TNFα were not detected in any sample. The only cytokine detected at a significant level in samples from RD vitreous was IL-6. The IL-10/IL-6 ratio, as previously reported, was slightly higher in PIOL than in uveitis samples, but not for all patients. Cytokine profiles from PIOL and OCL samples did not differ. The combination of the IL-10/IL-6 and IL-10/IFNγ ratios was highly informative for discriminating PIOL/OCL from uveitis samples and for therapeutic follow up of PIOL. This strategy might be very helpful as an initial screening to rule out PIOL in patients thought to have uveitis.     

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

Genome-wide association studies have been successful in identifying genes involved in polygenic traits and are valuable for crop improvement. Tomato (Solanum lycopersicum) is a major crop and is highly appreciated worldwide for its health value. We used a core collection of 163 tomato accessions composed of S. lycopersicum, S. lycopersicum var cerasiforme, and Solanum pimpinellifolium to map loci controlling variation in fruit metabolites. Fruits were phenotyped for a broad range of metabolites, including amino acids, sugars, and ascorbate. In parallel, the accessions were genotyped with 5,995 single-nucleotide polymorphism markers spread over the whole genome. Genome-wide association analysis was conducted on a large set of metabolic traits that were stable over 2 years using a multilocus mixed model as a general method for mapping complex traits in structured populations and applied to tomato. We detected a total of 44 loci that were significantly associated with a total of 19 traits, including sucrose, ascorbate, malate, and citrate levels. These results not only provide a list of candidate loci to be functionally validated but also a powerful analytical approach for finding genetic variants that can be directly used for crop improvement and deciphering the genetic architecture of complex traits.In crops, linkage mapping has proved invaluable for detecting quantitative trait loci (QTLs) for traits of interest and to unravel their underlying genetic architecture. This approach is based on the analysis of the segregation of polymorphism between the parental lines and their progeny. However, one of the limitations of this approach is the reduced number of recombination events that occur per generation (for review, see Korte and Farlow, 2013). This leads to extended linkage blocks that reduce the accuracy of the linkage mapping. An alternative to linkage-based mapping studies is to perform linkage disequilibrium (LD) mapping in a population of theoretically unrelated individuals. The ancestral polymorphism segregating through this population (or panel) is far more informative compared with the polymorphism of the parental lines of the linkage mapping population (Mauricio, 2001). LD mapping, also known as genome-wide association (GWA), relies on the natural patterns of LD in the population investigated. The aim of GWA is to reveal trait-associated loci by taking advantage of the level of LD. Depending on the decay of LD, the mapping resolution can be narrowed from a large genomic portion where the level of LD is relatively high to a single marker when the LD level is very low.Following domestication, crops are prone to (1) increased levels of LD, (2) population structure (remote common ancestry of large groups of individuals), and (3) cryptic relatedness (the presence of close relatives in a sample of unrelated individuals; Riedelsheimer et al., 2012). Population structure and cryptic relatedness may lead to false-positive association in GWA studies (Astle and Balding, 2009), but their effect is now relatively well accounted for in mixed linear models (for review, see Sillanpää, 2011; Listgarten et al., 2012). The problem of high LD in GWA scans also must be taken into account: Segura et al. (2012) investigated this difficulty by proposing a multilocus mixed model (MLMM) that handles the confounding effect of background loci that may be present throughout the genome due to LD. This approach revealed multiple loci in LD and associated with sodium concentration in leaves in Arabidopsis (Arabidopsis thaliana), while previous methods failed to identify this complex pattern (Segura et al., 2012).In parallel, the development of cost-effective high-throughput sequencing technologies has identified increasingly dense variant loci necessary to conduct GWA scans, especially in model species such as rice (Oryza sativa) for agronomic traits (Huang et al., 2010) or maize (Zea mays) for drought tolerance (Lu et al., 2010; for review, see Soto-Cerda and Cloutier, 2012). However, GWA is not restricted to model species and is becoming increasingly widespread in nonmodel ones such as sunflower (Helianthus annuus; Mandel et al., 2013) and tomato (Solanum lycopersicum; Xu et al., 2013), where numerous associations have been successfully identified for traits related to plant architecture (branching in the case of sunflower) and fruit quality (e.g. fresh weight in tomato).Tomato is a crop of particular interest, as the fruit are an important source of fiber and nutrients in the human diet and a model for the study of fruit development (Giovannoni, 2001). Over the last two decades, numerous QTLs have been identified for traits such as fresh weight using linkage approaches (Frary et al., 2000; Zhang et al., 2012; Chakrabarti et al., 2013) but also for other fruit-related traits such as fruit ascorbic acid levels (Stevens et al., 2007), sensory and instrumental quality traits (Causse et al., 2002), sugar and organic acids (Fulton et al., 2002), and metabolic components (Schauer et al., 2008). Large tomato germplasm collections have been characterized at the molecular level using simple sequence repeat (Ranc et al., 2008) and single-nucleotide polymorphism (SNP) markers (Blanca et al., 2012; Shirasawa et al., 2013), giving insights into population structure, tomato evolutionary history, and the genetic architecture of traits of agronomic interest. These screens of nucleotide diversity were made possible (for review, see Bauchet and Causse, 2012) in the last couple of years due to the release of the tomato genome sequence (Tomato Genome Consortium, 2012) and derived genomic tools such as a high-density SNP genotyping array (Sim et al., 2012). The combination of large germplasm collections, high-throughput genomic tools, and traits of economic interest provide a framework to apply genome-wide association study (GWAS) in this species. In tomato, previous association studies have been limited to a targeted region (e.g. chromosome 2; Ranc et al., 2012), used low-density genome-wide-distributed SNP markers (Xu et al., 2013), or investigated a limited number of agronomic traits with low precision on the association panel (Shirasawa et al., 2013).Using tomato as a model, we aimed to investigate the genetic architecture of traits related to fruit metabolic composition at high resolution. To reach this objective, we carried out an investigation into LD patterns at the genome-wide scale and a GWA scan using the MLMM approach. We present results on the genetic architecture of fruit metabolic composition for metabolites such as organic acids, amino acids, sugars, and ascorbate in tomato.     

Improved differentiation of umbilical cord blood-derived mesenchymal stem cells into insulin-producing cells by PDX-1 mRNA transfection

Numerous studies have sought to identify diabetes mellitus treatment strategies with fewer side effects. Mesenchymal stem cell (MSC) therapy was previously considered as a promising therapy; however, it requires the cells to be trans-differentiated into cells of the pancreatic-endocrine lineage before transplantation. Previous studies have shown that PDX-1 expression can facilitate MSC differentiation into insulin-producing cells (IPCs), but the methods employed to date use viral or DNA-based tools to express PDX-1, with the associated risks of insertional mutation and immunogenicity. Thus, this study aimed to establish a new method to induce PDX-1 expression in MSCs by mRNA transfection. MSCs were isolated from human umbilical cord blood and expanded in vitro, with stemness confirmed by surface markers and multipotentiality. MSCs were transfected with PDX-1 mRNA by nucleofection and chemically induced to differentiate into IPCs (combinatorial group). This IPC differentiation was then compared with that of untransfected chemically induced cells (inducer group) and uninduced cells (control group). We found that PDX-1 mRNA transfection significantly improved the differentiation of MSCs into IPCs, with 8.3±2.5% IPCs in the combinatorial group, 3.21±2.11% in the inducer group and 0% in the control. Cells in the combinatorial group also strongly expressed several genes related to beta cells (Pdx-1, Ngn3, Nkx6.1 and insulin) and could produce C-peptide in the cytoplasm and insulin in the supernatant, which was dependent on the extracellular glucose concentration. These results indicate that PDX-1 mRNA may offer a promising approach to produce safe IPCs for clinical diabetes mellitus treatment.     

短梗千金藤,越南防己科新记录种（英文）

报道了越南防己科(Menispermaceae)一新记录种:短梗千金藤(Stephania brevipes Craib)。据文献记载,该种仅分布于泰国,现首次在越南发现其分布。本种与粪箕笃(S.longa Lour.)形态相近,但叶宽三角状卵形至三角状扁圆形,雄花序小,腋生或生于无叶的茎上,总梗较短,花萼淡黄色,花瓣红紫色,内果皮外部沟数目较少而与后者不同。还提供了该种详细的形态学描述、图版、分布及生态学等信息。凭证标本保存在越南国立自然博物馆标本馆(VNMN)和中国科学院华南植物园标本馆(IBSC)。